What is Epigenome Sequencing?

The epigenome consists of chemical modifications and proteins that regulate gene activity without changing the DNA sequence itself. Epigenome sequencing (epigenomics) uses NGS to map these modifications genome-wide, revealing how cells control gene expression in health and disease.

Key epigenetic mechanisms include:

  • DNA methylation (primarily 5-methylcytosine)
  • Histone post-translational modifications (acetylation, methylation, phosphorylation, etc.)
  • Chromatin accessibility and nucleosome positioning
  • Non-coding RNA-mediated regulation

Our Comprehensive Epigenome Sequencing Services

1. Whole Genome Bisulfite Sequencing (WGBS)

The gold-standard method for single-base resolution DNA methylation profiling across the entire genome. WGBS detects 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) by converting unmethylated cytosines to uracil while preserving methylated ones.

Applications: Global methylation patterns, differentially methylated regions (DMRs), cancer epigenetics, developmental biology, and environmental toxicology.

2. Reduced Representation Bisulfite Sequencing (RRBS)

A cost-effective, targeted approach that enriches CpG-rich regions (promoters, CpG islands) using restriction enzymes followed by bisulfite conversion. Ideal when full WGBS depth is not required or budget is a constraint.

Advantages: High coverage of regulatory regions with significantly lower sequencing cost and data volume.

3. Chromatin Immunoprecipitation Sequencing (ChIP-Seq)

Maps genome-wide protein-DNA interactions and histone modifications. We perform ChIP-Seq for transcription factors, histone marks (H3K4me3, H3K27ac, H3K27me3, etc.), and other chromatin-associated proteins.

Key Outputs: Peak calling, motif analysis, enhancer/promoter identification, and integration with RNA-Seq data.

4. Assay for Transposase-Accessible Chromatin Sequencing (ATAC-Seq)

A fast, sensitive method to profile open chromatin regions using Tn5 transposase. ATAC-Seq requires minimal input material and provides high signal-to-noise ratio for identifying active regulatory elements, nucleosome-free regions, and transcription factor binding sites.

Variants: Bulk ATAC-Seq and single-cell ATAC-Seq (scATAC-Seq) for cellular heterogeneity studies.

5. Additional Epigenomic Services

  • MeDIP-Seq / hMeDIP-Seq (Methylated DNA Immunoprecipitation)
  • Histone modification panels and custom ChIP-Seq
  • Integration of multi-omics data (Epigenome + Transcriptome + Genome)
  • Single-cell epigenomics (scATAC-Seq, scWGBS, etc.)

Advanced Workflow for Epigenome Sequencing at Yaazh Xenomics

  • High-quality DNA/ chromatin extraction from diverse samples (cells, tissues, FFPE, blood, plants, microbes)
  • Optimized library preparation with bisulfite conversion, immunoprecipitation, or tagmentation
  • High-throughput sequencing on Illumina NovaSeq and compatible platforms with appropriate read depth
  • Comprehensive bioinformatics pipeline: Quality control, alignment (Bismark, Bowtie2), peak calling (MACS2), differential analysis, motif discovery, GO/KEGG enrichment, and visualization
  • Delivery of raw FASTQ files, processed data, interactive reports, and publication-ready figures

Applications of Epigenome Sequencing

  • Cancer epigenetics and biomarker discovery
  • Developmental biology and stem cell research
  • Neurological disorders and imprinting diseases
  • Environmental epigenomics and toxicology
  • Plant epigenetics for stress response and crop improvement
  • Drug response prediction and pharmacoepigenomics
  • Infectious disease research (host-pathogen epigenetic interactions)
  • Aging and regenerative medicine studies

Why Choose Yaazh Xenomics for Epigenome Sequencing?

  • Expert team experienced in handling challenging samples and low-input materials
  • High data quality with stringent QC and validated protocols
  • Customized experimental design and multi-omics integration
  • Fast turnaround time with competitive pricing for academic and industrial clients
  • Seamless combination with other NGS services: Whole Genome, Transcriptome, Metagenome, and Sanger validation
  • Detailed, easy-to-interpret reports with expert consultation
  • Pan-India service with dedicated project management

Best Suited Platforms

HiSeq system (Methylation / MBD, ChIP sequencing)
Nanopore

Workflow Pattern

Explore Epigenetic Changes in Your Samples

Contact our epigenomics specialists for a free consultation, project design recommendations, or a customized quote.

Phone: +91 99431 32020 | +91 95002 45454

Email: info@yaazhxenomics.com

Coimbatore Laboratory:
Module No. 103, TICEL BIOPARK Phase – III, 1st Floor,
Maruthamalai Road, Coimbatore - 641046, Tamil Nadu, India

Visakhapatnam Office:
No.9-6, Sritej Nagar, Anandapuram, Visakhapatnam - 531022, Andhra Pradesh

Unlock the regulatory code of the genome with precise Epigenome Sequencing from Yaazh Xenomics — your trusted NGS partner in India.

Yaazh Xenomics — Delivering high-resolution Epigenome Sequencing (WGBS, RRBS, ChIP-Seq, ATAC-Seq) with expert bioinformatics for groundbreaking research in epigenetics and gene regulation across India.

Request A Quote
Yaazh Xenomics,
Module No. 103,
TICEL BIOPARK Phase – III,
1st floor, Maruthamalai Road,
Coimbatore - 641046.
Tamil Nadu, India
Yaazh Xenomics,
No.9-6, Sritej Nagar,
Anandapuram,
Visakhapatnam -531022.
Andhra Pradesh
Yaazh Xenomics,
Ground Floor, Plot No.17-R1,
120 feet Road,
Vivekananda Nagar,
Sambakulam, Madurai - 625 007,
Tamil Nadu. Indi

Yaazh Xenomics is a leading biotechnology company based in Coimbatore, Tamil Nadu, India, specializing in comprehensive genomic solutions. As a DNA testing laboratory, we offer a broad spectrum of services, including DNA sequencing, RNA Sequencing, Sanger Sequencing, 16s rRNA, 18s rRNA, ITS, COI, RBCL, Matk gene Sequencing for DNA Barcoding, gene expression analysis, SNP analysis, Next-Generation Sequencing (NGS), Various Medical Genome testing, Exome Sequencing, Gut Microbiome Test, Metagenome Sequencing, Whole Genome Sequencing (WGS), Transcriptome Sequencing using advance NGS platforms like Nanopore, Illumina, MGI, Thermo. Also, we provide advance Bioinformatics, Customized Bioinformatics and a variety of other genetic testing and Molecular testing.

 

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