Microbial_Identification

Microbial Identification Services India: 16S rRNA, 18S rRNA, ITS & Shotgun Metagenomics

Yaazh Xenomics – ISO-Certified Genomics Lab in Coimbatore, Tamil Nadu, India
Precise, affordable, publication-ready microbial identification for researchers, industries & institutions across India.

Why Microbial Identification Matters in 2026

Microbes drive 90% of Earth's biochemical processes. Accurate identification is essential for microbiome research, environmental monitoring, food safety, probiotics validation, clinical diagnostics, agriculture, and bioremediation. Traditional culturing misses >99% of microbes. Modern DNA-based methods (16S/18S/ITS amplicon & shotgun metagenomics) reveal the full unculturable microbial world.

At Yaazh Xenomics, we deliver end-to-end microbial identification services using gold-standard Sanger + cutting-edge NGS (Illumina & Oxford Nanopore) with free expert bioinformatics.

Our Microbial Identification Technologies

MethodTarget OrganismsTechnologyKey AdvantagesBest For
16S rRNA SequencingBacteria & Archaea (incl. Actinomycetes)Sanger (full ~1500 bp) or NGS (V3-V4)Gold standard taxonomic ID, phylogenetic treesPure cultures, environmental samples, probiotics
18S rRNA SequencingFungi, Protists, Algae, Micro-eukaryotesSanger (full ~1800 bp) or NGS (V4/V9)High-resolution eukaryotic diversitySoil, water, marine, gut eukaryotic communities
ITS SequencingFungi (species-level)Sanger or NGS (ITS1/ITS2)Highest fungal resolution (UNITE database)Fermented foods, clinical fungi, soil mycology
Shotgun MetagenomicsAll microbes + viruses + functional genesIllumina / Nanopore (deep sequencing)Strain-level + functional pathways (KEGG, CARD)Gut microbiome, AMR studies, novel gene discovery

Our Complete Workflow (End-to-End)

  1. Sample Collection & DNA Extraction – Optimized kits for soil, water, gut, food, clinical, plant, sediment samples. Host depletion available.
  2. PCR Amplification – Hypervariable regions (16S: V1–V9 or V3-V4; 18S: V4; ITS: ITS1/2) using universal primers (27F/1492R, TAReuk454FWD1, etc.). Gel verification.
  3. Library Prep & Sequencing – Sanger for pure isolates; Illumina/Nanopore for complex communities. High-depth coverage (Q20+ quality).
  4. Bioinformatics Analysis (Free standard package):
    • Quality trimming, denoising, OTU/ASV clustering (QIIME2/Mothur/DADA2)
    • Taxonomic classification (SILVA, Greengenes, UNITE, PR2, NCBI)
    • Alpha/Beta diversity, rarefaction curves, PCoA/heatmaps
    • Phylogenetic trees (ML/NJ), differential abundance
    • Functional profiling (HUMAnN, KEGG) for shotgun
    • Antibiotic resistance (CARD), virulence (VFDB)
  5. Publication-Ready Deliverables – Raw FASTQ/.ab1 files, assembled contigs, taxonomy tables, diversity reports, phylogenetic trees (Newick + PDF), full methodology PDF.

Why Researchers & Industries Choose Yaazh Xenomics

  • Affordable Excellence – Latest NGS + Sanger at the lowest prices in India (“Latest Technology in Lowest Price”).
  • Free Advanced Bioinformatics – OTU/ASV tables, phylogenetic trees, diversity analysis & custom reports included.
  • ISO-Certified Quality – Strict contamination controls, clean-room protocols, negative/positive controls.
  • Pan-India Service – Coimbatore HQ + branches in Chennai, Madurai, Mumbai, Pondicherry & Visakhapatnam. Free sample pickup all over India.
  • Fast TAT – 7–10 days (Sanger) / 15–35 days (NGS metagenomics).
  • Publication & Thesis Ready – Data accepted in high-impact journals; raw files + detailed reports provided.

Key Applications in India

Frequently Asked Questions

What is the difference between 16S rRNA and shotgun metagenomics?

16S rRNA (amplicon) gives taxonomic diversity (bacteria/archaea) at low cost. Shotgun gives strain-level resolution + functional genes (pathways, resistance).

Do you provide raw data and phylogenetic trees?

Yes – full raw FASTQ/.ab1 files, assembled sequences, BLAST reports, and publication-ready phylogenetic trees are standard deliverables.

Which sample types do you accept?

Soil, water, gut contents, food, clinical swabs, plant roots, sediments, probiotics cultures & extracted DNA.

Is your data suitable for research publications?

Absolutely. All reports follow MIxS standards and include methodology for easy journal submission.

Ready for Accurate Microbial Identification?

Get a free quote for 16S rRNA, 18S, ITS or shotgun metagenomics sequencing today.

Request Quote – Fast & Affordable Microbial Services

📍 Coimbatore | Chennai | Madurai | Mumbai | Pondicherry | Visakhapatnam
📞 +91 99431 32020 | ✉️ info@yaazhxenomics.com


 

Yaazh Xenomics,
Module No. 103,
TICEL BIOPARK Phase – III,
1st floor, Maruthamalai Road,
Coimbatore - 641046.
Tamil Nadu, India
Yaazh Xenomics,
No.9-6, Sritej Nagar,
Anandapuram, 
Visakhapatnam -531022
Andhra Pradesh

Yaazh Xenomics is a leading biotechnology company based in Coimbatore, Tamil Nadu, India, specializing in comprehensive genomic solutions. As a DNA testing laboratory, we offer a broad spectrum of services, including DNA sequencing, RNA Sequencing, Sanger Sequencing, 16s rRNA, 18s rRNA, ITS, COI, RBCL, Matk gene Sequencing for DNA Barcoding, gene expression analysis, SNP analysis, Next-Generation Sequencing (NGS), Various Medical Genome testing, Exome Sequencing, Gut Microbiome Test, Metagenome Sequencing, Whole Genome Sequencing (WGS), Transcriptome Sequencing using advance NGS platforms like Nanopore, Illumina, MGI, Thermo. Also, we provide advance Bioinformatics, Customized Bioinformatics and a variety of other genetic testing and Molecular testing.

 

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